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2 changes: 1 addition & 1 deletion DESCRIPTION
Original file line number Diff line number Diff line change
Expand Up @@ -30,6 +30,7 @@ Depends:
R (>= 4.1.0)
Imports:
data.table,
dirmult,
glue,
methods,
mvnfast,
Expand Down Expand Up @@ -61,7 +62,6 @@ Suggests:
broom.helpers,
survminer,
katex,
dirmult,
rms,
lmerTest
LinkingTo:
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3 changes: 3 additions & 0 deletions NEWS.md
Original file line number Diff line number Diff line change
@@ -1,5 +1,8 @@
# simstudy (development version)

* `clusterSize` now works after a standard installation: `dirmult` is a
required dependency rather than an optional suggestion (#257).

## New feature

* Added optional argument `withinClusterID` to `genCluster()` to generate
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8 changes: 0 additions & 8 deletions R/generate_dist.R
Original file line number Diff line number Diff line change
Expand Up @@ -655,14 +655,6 @@

.genclustsize <- function(n, formula, variance = 0, envir = parent.frame()) {

if (!requireNamespace("dirmult", quietly = TRUE)) { # nocov start
stop(
"Package \"dirmult\" must be installed to use this function with
the Poisson distribution.",
call. = FALSE
)
} # nocov end

formula <- .evalWith(formula, .parseDotVars(formula, envir), envir = envir)[1]
variance <- .evalWith(variance, .parseDotVars(variance, envir), envir = envir)[1]

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39 changes: 39 additions & 0 deletions tests/testthat/test-generate_dist.R
Original file line number Diff line number Diff line change
Expand Up @@ -177,6 +177,45 @@ test_that("clusterSize data is generated as expected.", {
})


test_that("genData preserves clusterSize totals for both dispersion branches", {
for (dispersion in c(0, 0.05)) {
def <- defData(
varname = "size", formula = 103, variance = dispersion,
dist = "clusterSize"
)
dt <- genData(10, def)

expect_length(dt$size, 10)
expect_true(all(dt$size >= 0))
expect_equal(dt$size, floor(dt$size))
expect_equal(sum(dt$size), 103)
if (dispersion == 0) {
expect_lte(diff(range(dt$size)), 1)
}
}
})

test_that("addColumns preserves clusterSize totals and existing identifiers", {
clusters <- genData(10)

for (dispersion in c(0, 0.05)) {
def <- defDataAdd(
varname = "size", formula = 103, variance = dispersion,
dist = "clusterSize"
)
dt <- addColumns(def, clusters)

expect_identical(dt$id, clusters$id)
expect_length(dt$size, 10)
expect_true(all(dt$size >= 0))
expect_equal(dt$size, floor(dt$size))
expect_equal(sum(dt$size), 103)
if (dispersion == 0) {
expect_lte(diff(range(dt$size)), 1)
}
}
})

# .gencustom ----
test_that("custom data is generated as expected.", {
skip_on_cran()
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