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@gitter-lab

Gitter Lab

Computational biology research group at UW-Madison and the Morgridge Institute

Popular repositories Loading

  1. nn4dms nn4dms Public

    Neural networks for deep mutational scanning data

    Jupyter Notebook 75 17

  2. metl metl Public

    Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models

    Python 64 10

  3. metl-sim metl-sim Public

    High-throughput framework for running molecular simulations for METL

    Python 23 6

  4. LPWC LPWC Public

    Lag Penalized Weighted Correlation for Time Series Clustering

    R 21 3

  5. metl-pretrained metl-pretrained Public

    Pretrained METL models with minimal dependencies

    Python 18 4

  6. ml4bio ml4bio Public

    A graphical interface for sklearn classification to introduce machine learning to biologists

    Python 14 3

Repositories

Showing 10 of 39 repositories
  • metl-pub Public

    Supplementary datasets and scripts for the METL manuscript

    gitter-lab/metl-pub's past year of commit activity
    Jupyter Notebook 10 MIT 1 0 0 Updated Nov 7, 2026
  • metl-pretrained Public

    Pretrained METL models with minimal dependencies

    gitter-lab/metl-pretrained's past year of commit activity
    Python 18 MIT 4 1 1 Updated Sep 16, 2026
  • lpca-spras Public Forked from Jeebjean/lpca-spras

    Logistic PCA integration into SPRAS bioinformatics pipeline

    gitter-lab/lpca-spras's past year of commit activity
    Python 0 1 0 0 Updated Aug 28, 2026
  • yeast-ppi-af3-su26 Public Forked from Sabah-hoq/yeast-ppi-af3-su26

    Explore AlphaFold3 predicted yeast protein-protein interactions

    gitter-lab/yeast-ppi-af3-su26's past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Aug 28, 2026
  • active-learning-drug-discovery Public

    Iterative chemical screening pipeline for drug discovery

    gitter-lab/active-learning-drug-discovery's past year of commit activity
    Jupyter Notebook 6 MIT 0 13 1 Updated Jul 22, 2026
  • SINGE Public

    Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data

    gitter-lab/SINGE's past year of commit activity
    MATLAB 11 MIT 6 13 3 Updated Jul 6, 2026
  • ALDD-PstP-Results Public

    Active Learning in Drug Discovery PstP Results

    gitter-lab/ALDD-PstP-Results's past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 3, 2026
  • adaptyvbio-nipah Public

    Adaptyv Nipah Binder Competition

    gitter-lab/adaptyvbio-nipah's past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Mar 20, 2026
  • metl Public

    Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models

    gitter-lab/metl's past year of commit activity
    Python 64 MIT 10 3 1 Updated Feb 3, 2026
  • tps Public Forked from koksal/tps

    Temporal Pathway Synthesizer

    gitter-lab/tps's past year of commit activity
    Jupyter Notebook 0 8 0 1 Updated Oct 10, 2025